Breath Testing

Breath testing is a safe, simple, non-invasive diagnostic tool for SIBO that is widely available and relatively inexpensive. The test involves drinking a sugar-based solution and breathing into a test kit at regular intervals. If you have SIBO, the excess bacteria in your gut ferment the sugar, producing hydrogen, methane, or hydrogen sulfide gases. These gases enter the bloodstream, are exhaled through the breath, and captured by the test kit. By measuring the concentrations of these gases at specific time intervals, doctors can determine if bacterial overgrowth is present and whether the primary offenders are hydrogen- or methane-producing microbes, which can help guide treatment decisions.

At-Home Testing

Recent advancements have made at-home breath testing a convenient and effective alternative to in-office testing. Your doctor can order a test kit to be delivered to your home or you can order it directly yourself. After completing the test, you need to mail the kit to a lab for analysis. The test provider will report back your results which you can share with your doctor directly. 

Medical Facility Testing

For those who prefer professional oversight, breath tests can also be conducted in a doctor’s office or hospital. The testing process is similar to at-home testing, but samples are analyzed immediately, often leading to faster results. In-office testing may be preferable for individuals who require assistance with sample collection or those with complex medical histories.

Breath testing image
Breath testing image

Pros:

  • Non-invasive and widely available.

  • Can help differentiate between different types of SIBO which informs treatment choices.

  • Less expensive and less invasive than aspirate testing.

  • At-home testing options available.

  • Able to measure methane levels and therefore detect IMO and some tests can also detect hydrogen sulfide SIBO.

Cons:

  • May produce false positives or false negatives.

  • Does not specify the exact location or species of bacteria.

  • Requires strict dietary preparation before testing.

Duodenum/jejunal (Bowel) aspiration

Duodenum/jejunal (bowel) aspiration is considered one of the most accurate techniques for identifying SIBO. However, the test is expensive, invasive, and if not performed correctly, can lead to an incorrect diagnosis. This test involves collecting a fluid sample from the small intestine and analyzing it for bacterial overgrowth. A doctor inserts a flexible tube (endoscope) through the mouth, down the esophagus, and into the small intestine. Fluid is sucked (aspirated) from the duodenum or jejunum, the first and second parts of the small intestine. The sample is then studied to assess the type, count, and composition of any bacteria present.

sibo bowel aspiration

Pros:

  • Directly measures bacteria in the small intestine.

  • Identifies the specific types of bacteria present in the gut.

  • More sensitive test which may enable a more accurate diagnosis.

Cons:

  • Invasive, costly, and requires sedation.

  • Only detects bacteria in a limited section of the small intestine which can lead to inaccurate results.

  • Can be affected by bacteria from the mouth, potentially causing false readings.  

  • Unable to measure methane or hydrogen sulfide so cannot detect IMO or hydrogen sulfide SIBO.

Differential Diagnosis (Symptoms)

It is not always necessary to test for SIBO (or IMO), as doctors can often diagnose based on your past medical history and clinical presentation (symptoms). Your doctor may be able to determine if your symptoms align with SIBO and advise treatment based on a complete medical history. Sharing the details of your condition and past medical history with your doctor is crucial in determining the root of your symptoms. Changes in your symptoms are also used to evaluate the efficacy of your treatment, often in place of follow up testing.

SIBO doctor
SIBO doctor

Pros:

  • Non-invasive and easy to perform.

  • Can help identify the root cause of your SIBO.

  • Less expensive than additional testing.

Cons:

  • Does not measure bacterial overgrowth.

  • Symptoms of SIBO can be nonspecific making it difficult to differentiate from other gastrointestinal disorders.

Breath Testing

Breath testing is a safe, simple, non-invasive diagnostic tool for SIBO that is widely available and relatively inexpensive. The test involves drinking a sugar-based solution and breathing into a test kit at regular intervals. If you have SIBO, the excess bacteria in your gut ferment the sugar, producing hydrogen, methane, or hydrogen sulfide gases. These gases enter the bloodstream, are exhaled through the breath, and captured by the test kit. By measuring the concentrations of these gases at specific time intervals, doctors can determine if bacterial overgrowth is present and whether the primary offenders are hydrogen- or methane-producing microbes, which can help guide treatment decisions.

At-Home Testing

Recent advancements have made at-home breath testing a convenient and effective alternative to in-office testing. Your doctor can order a test kit to be delivered to your home or you can order it directly yourself. After completing the test, you need to mail the kit to a lab for analysis. The test provider will report back your results which you can share with your doctor directly. 

Medical Facility Testing

For those who prefer professional oversight, breath tests can also be conducted in a doctor’s office or hospital. The testing process is similar to at-home testing, but samples are analyzed immediately, often leading to faster results. In-office testing may be preferable for individuals who require assistance with sample collection or those with complex medical histories.

Breath testing image

Pros:

  • Non-invasive and widely available.

  • Can help differentiate between different types of SIBO which informs treatment choices.

  • Less expensive and less invasive than aspirate testing.

  • At-home testing options available.

  • Able to measure methane levels and therefore detect IMO and some tests can also detect hydrogen sulfide SIBO.

Cons:

  • May produce false positives or false negatives.

  • Does not specify the exact location or species of bacteria.

  • Requires strict dietary preparation before testing.

Duodenum/jejunal (Bowel) aspiration

Duodenum/jejunal (bowel) aspiration is considered one of the most accurate techniques for identifying SIBO. However, the test is expensive, invasive, and if not performed correctly, can lead to an incorrect diagnosis. This test involves collecting a fluid sample from the small intestine and analyzing it for bacterial overgrowth. A doctor inserts a flexible tube (endoscope) through the mouth, down the esophagus, and into the small intestine. Fluid is sucked (aspirated) from the duodenum or jejunum, the first and second parts of the small intestine. The sample is then studied to assess the type, count, and composition of any bacteria present.

sibo bowel aspiration

Pros:

  • Directly measures bacteria in the small intestine.

  • Identifies the specific types of bacteria present in the gut.

  • More sensitive test which may enable a more accurate diagnosis.

Cons:

  • Invasive, costly, and requires sedation.

  • Only detects bacteria in a limited section of the small intestine which can lead to inaccurate results.

  • Can be affected by bacteria from the mouth, potentially causing false readings.  

  • Unable to measure methane or hydrogen sulfide so cannot detect IMO or hydrogen sulfide SIBO.

Differential Diagnosis (Symptoms)

It is not always necessary to test for SIBO (or IMO), as doctors can often diagnose based on your past medical history and clinical presentation (symptoms). Your doctor may be able to determine if your symptoms align with SIBO and advise treatment based on a complete medical history. Sharing the details of your condition and past medical history with your doctor is crucial in determining the root of your symptoms. Changes in your symptoms are also used to evaluate the efficacy of your treatment, often in place of follow up testing.

SIBO doctor

Pros:

  • Non-invasive and easy to perform.

  • Can help identify the root cause of your SIBO.

  • Less expensive than additional testing.

Cons:

  • Does not measure bacterial overgrowth.

  • Symptoms of SIBO can be nonspecific making it difficult to differentiate from other gastrointestinal disorders.

Logo

Small Intestinal Bacterial Overgrowth (SIBO) affects 1 in 9 people. By providing science-backed resources, research and solutions we support patients on their journey to health.

Learn More

hello@siboawareness.org

This information is in no way intended to replace the guidance of your doctor. SIBOawareness.org does not provide medical advice, diagnosis or treatment.

Newsletter

Join our mailing list: Be the first to hear about new research, receive discounts from our supporters and learn more about managing your SIBO!

© 2025 Gut Microbiome Foundation.

All Rights Reserved

Logo

Small Intestinal Bacterial Overgrowth (SIBO) affects 1 in 9 people. By providing science-backed resources, research and solutions we support patients on their journey to health.

Learn More

hello@siboawareness.org

This information is in no way intended to replace the guidance of your doctor. SIBOawareness.org does not provide medical advice, diagnosis or treatment.

Newsletter

Join our mailing list: Be the first to hear about new research, receive discounts from our supporters and learn more about managing your SIBO!

© 2025 Gut Microbiome Foundation. All Rights Reserved

Logo

Small Intestinal Bacterial Overgrowth (SIBO) affects 1 in 9 people. By providing science-backed resources, research and solutions we support patients on their journey to health.

Learn More

hello@siboawareness.org

This information is in no way intended to replace the guidance of your doctor. SIBOawareness.org does not provide medical advice, diagnosis or treatment.

Newsletter

Join our mailing list: Be the first to hear about new research, receive discounts from our supporters and learn more about managing your SIBO!

© 2025 Gut Microbiome Foundation.
All Rights Reserved